NAPP NAPP

Escherichia_coli_536    Total Clusters: 6

Phylogenetic profiles of RNA-rich cluster

Each column represents the average phylogenetic profile of all members of an RNA-rich cluster. White squares indicate that members of this cluster do not have homologues in this species. Shaded squares indicate that members of this cluster have homologues in this species (darker: homologues with higher Blast scores, lighter: homologues with lower Blast scores). Move cursor across columns for information about Gene Ontology term biases in the coding sequences (CDS) and contents of the corresponding clusters. Click on column or column number to visualize cluster contents (and use "back" button to come back here). Click on species name to jump to the NAPP page for this species.

Color code
No homologLegendeHomolog with high blast score

0%
123456
                  Lactobacillus_rhamnosus_Lc_705
                  Lactobacillus_rhamnosus_GG
                  Lactobacillus_casei_ATCC_334
                  Lactobacillus_casei
                  Lactobacillus_sakei_23K
                  Lactobacillus_plantarum
                  Dehalococcoides_GT_uid42115
                  Lactobacillus_plantarum_JDM1
                  Lactobacillus_brevis_ATCC_367
                  Pediococcus_pentosaceus_ATCC_25745
                  Lactobacillus_salivarius_UCC118
                  Bacillus_pseudofirmus_OF4_uid45847
                  Bacillus_halodurans
                  Bacillus_clausii_KSM-K16
                  Bacillus_subtilis
                  Bacillus_amyloliquefaciens_FZB42
                  Bacillus_licheniformis_ATCC_14580
                  Bacillus_licheniformis_DSM_13
                  Bacillus_pumilus_SAFR-032
                  Bacillus_cereus_03BB102
                  Bacillus_cereus_AH820
                  Bacillus_thuringiensis_konkukian
                  Bacillus_cereus_ZK
                  Bacillus_anthracis_Ames_0581
                  Bacillus_cereus_Q1
                  Bacillus_anthracis_Ames
                  Bacillus_anthracis_str_Sterne
                  Bacillus_anthracis_CDC_684
                  Bacillus_cereus_ATCC_10987
                  Bacillus_thuringiensis_Al_Hakam
                  Bacillus_cereus_B4264
                  Bacillus_cereus_G9842
                  Bacillus_cereus_ATCC14579
                  Bacillus_anthracis_A0248
                  Bacillus_cereus_AH187
                  Bacillus_weihenstephanensis_KBAB4
                  Bacillus_cereus_cytotoxis_NVH_391-98
                  Lysinibacillus_sphaericus_C3_41
                  Staphylococcus_aureus_Newman
                  Staphylococcus_aureus_MW2
                  Staphylococcus_aureus_USA300_FPR3757
                  Staphylococcus_aureus_COL
                  Staphylococcus_aureus_Mu50
                  Staphylococcus_aureus_ED98
                  Staphylococcus_aureus_N315
                  Staphylococcus_aureus_aureus_MRSA252
                  Staphylococcus_aureus_RF122
                  Staphylococcus_aureus_USA300_TCH1516
                  Staphylococcus_aureus_aureus_MSSA476
                  Staphylococcus_aureus_JH9
                  Staphylococcus_aureus_JH1
                  Staphylococcus_aureus_NCTC_8325
                  Staphylococcus_aureus_Mu3
                  Staphylococcus_epidermidis_RP62A
                  Staphylococcus_epidermidis_ATCC_12228
                  Staphylococcus_lugdunensis_HKU09_01_uid46233
                  Staphylococcus_haemolyticus
                  Staphylococcus_saprophyticus
                  Staphylococcus_carnosus_TM300
                  Macrococcus_caseolyticus_JCSC5402
                  Geobacillus_Y412MC61
                  Geobacillus_kaustophilus_HTA426
                  Geobacillus_thermodenitrificans_NG80-2
                  Geobacillus_WCH70
                  Anoxybacillus_flavithermus_WK1
                  Oceanobacillus_iheyensis
                  Listeria_monocytogenes_08_5923_uid43727
                  Listeria_monocytogenes_Clip81459
                  Listeria_monocytogenes_4b_F2365
                  Listeria_monocytogenes_uid43671
                  Listeria_monocytogenes
                  Listeria_monocytogenes_HCC23
                  Listeria_innocua
                  Listeria_welshimeri_serovar_6b_SLCC5334
                  Listeria_seeligeri_serovar_1_2b_SLCC3954_uid46215
                  Enterococcus_faecalis_V583
                  Lactobacillus_reuteri_F275_Kitasato
                  Lactobacillus_reuteri_DSM_20016
                  Lactobacillus_fermentum_IFO_3956
                  Exiguobacterium_sibiricum_255_15
                  Exiguobacterium_AT1b
                  Geobacillus_Y412MC10
                  Paenibacillus_JDR_2
                  Lactobacillus_helveticus_DPC_4571
                  Lactobacillus_acidophilus_NCFM
                  Lactobacillus_delbrueckii_bulgaricus_ATCC_BAA-365
                  Lactobacillus_delbrueckii_bulgaricus
                  Lactobacillus_johnsonii_FI9785
                  Lactobacillus_johnsonii_NCC_533
                  Lactobacillus_gasseri_ATCC_33323
                  Brevibacillus_brevis_NBRC_100599
                  Streptococcus_pyogenes_Manfredo
                  Streptococcus_pyogenes_SSI-1
                  Streptococcus_pyogenes_MGAS5005
                  Streptococcus_pyogenes_MGAS315
                  Streptococcus_pyogenes_MGAS2096
                  Streptococcus_pyogenes_MGAS6180
                  Streptococcus_pyogenes_MGAS9429
                  Streptococcus_pyogenes_MGAS10270
                  Streptococcus_pyogenes_M1_GAS
                  Streptococcus_pyogenes_NZ131
                  Streptococcus_pyogenes_MGAS10750