Query: Sequence ALU humaine 



BLASTN 2.0.10 [Aug-26-1999]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Query= 
         (290 letters)

Database: Non-redundant GenBank+EMBL+DDBJ+PDB sequences
           508,484 sequences; 1,464,144,584 total letters


 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs

Distribution of 7028 Blast Hits on the Query Sequence


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|U14573|HSU14573  ***ALU WARNING: Human Alu-Sq subfamily c...   529  e-148
gb|U14571|HSU14571  ***ALU WARNING: Human Alu-Sc subfamily c...   498  e-139
gb|U14572|HSU14572  ***ALU WARNING: Human Alu-Sp subfamily c...   490  e-136
gb|U14568|HSU14568  ***ALU WARNING: Human Alu-Sb subfamily c...   482  e-134
emb|AL109801.13|HSJ738A13  Human DNA sequence from clone RP4...   474  e-132
gb|U63630|HSU63630  Homo sapiens MCM4 and DNA-PKcs (PRKDC) g...   472  e-131
gb|AC004987.2|AC004987  Homo sapiens clone DJ1173I20, comple...   468  e-130
gb|AC004931.1|AC004931  Homo sapiens PAC clone RP5-922I23 fr...   468  e-130
gb|U66059|U66059  Human germline T-cell receptor beta chain ...   468  e-130
gb|AC007043.3|AC007043  Homo sapiens BAC clone RP11-507E21 f...   466  e-129
gb|AC005066.1|AC005066  Homo sapiens BAC clone CTB-118P15 fr...   466  e-129
gb|AC004130|AC004130  Homo sapiens BAC clone RG293F17 from 7...   466  e-129
gb|U73023.1|U73023  Homo sapiens cosmid clone U39B3 from Xp2...   466  e-129
dbj|AP000567.2|AP000567  Homo sapiens genomic DNA, chromosom...   464  e-129
gb|AC010072.5|AC010072  Homo sapiens chromosome 14q31 clone ...   460  e-127
emb|AL121591.2|HSJ706G20  Human DNA sequence from clone 706G...   460  e-127
emb|AL049647.7|HSJ1027G4  Human DNA sequence from clone 1027...   460  e-127
emb|AL031650.21|HS1018D12  Human DNA sequence from clone 101...   460  e-127
gb|AC007384.3|AC007384  Homo sapiens clone NH0325F22, comple...   460  e-127
emb|Z98051.6|HS501A4  Human DNA sequence from clone 501A4 on...   460  e-127
emb|AL031734.9|HS652L8  Human DNA sequence from clone 652L8 ...   460  e-127
gb|AC007298.17|AC007298  Homo sapiens 12q22 BAC RPCI11-256L6...   460  e-127
emb|AL023882.2|HS398F6  Human DNA sequence from clone 398F6 ...   460  e-127
gb|AC006251|AC006251  Homo sapiens chromosome 17, clone hRPK...   460  e-127
gb|AC004986.2|AC004986  Homo sapiens PAC clone RP5-1166A24 f...   460  e-127
gb|AF123462|DJ526N18  Homo sapiens BAC526N18 neurexin III ge...   460  e-127
gb|AC006195|AC006195  Homo sapiens clone UWGC:djs14 from 7p1...   460  e-127
gb|AC006128|AC006128  Homo sapiens chromosome 19, cosmid F20...   460  e-127
emb|AL031224.1|HS336H9  Human DNA sequence from clone 336H9 ...   460  e-127
emb|AL021453.1|HS821D11  Human DNA sequence from clone RP5-8...   460  e-127
gb|AF001549|HUAF001549  Human Chromosome 16 BAC clone CIT987...   460  e-127
gb|AF077058.1|AF077058  Pan troglodytes HS19.8-similar locus...   460  e-127
gb|AC004381.1|HUAC004381  Homo sapiens Chromosome 16 BAC clo...   460  e-127
gb|AC004016.1|AC004016  Homo sapiens BAC clone CTA-424N5 fro...   460  e-127
gb|AC003085|AC003085  Human BAC clone RG094H21 from 7q21-q22...   460  e-127
gb|AC002564|AC002564  Human BAC clone RG164L14 from 7q21-q22...   460  e-127
gb|AC002430|AC002430  Human BAC clone RG066D11 from 7q22, co...   460  e-127
emb|Z82210.1|HS431C21  Human DNA sequence from PAC 431C21 on...   460  e-127
emb|Z69666.1|HS24F8  Human DNA sequence from cosmid 24F8 fro...   460  e-127
gb|U14574|HSU14574  ***ALU WARNING: Human Alu-Sx subfamily c...   460  e-127
gb|AC006257|AC006257  Homo sapiens, clone hRPK.11_A_1, compl...   458  e-127
emb|AL109628.2|CNS018OT  Human chromosome 14 DNA sequence **...   456  e-126
emb|X76070|HSIGK211  H.sapiens IgK locus, clone cos211, DNA       456  e-126
dbj|AP000142.1|AP000142  Homo sapiens genomic DNA, chromosom...   452  e-125
dbj|AP000090.1|AP000090  Homo sapiens genomic DNA of 21q22.1...   452  e-125
gb|AC006292|AC006292  Homo sapiens chromosome 5, Bac clone 1...   452  e-125
gb|AC004940.1|AC004940  Homo sapiens PAC clone RP5-978E18 fr...   452  e-125
gb|AC004534|AC004534  Homo sapiens PAC clone DJ0545C24 from ...   452  e-125
emb|AL008709.1|HS262B17  Human DNA sequence from PAC 262B17 ...   452  e-125
dbj|D87675|D87675  Homo sapiens DNA for amyloid precursor pr...   452  e-125
dbj|D83989|HUMBRCA2  Human  BRCA2 gene for insertion sequenc...   452  e-125
emb|X75335|HSALUCOL  H.sapiens Alu insertion in COL3A1 gene       452  e-125
gb|AC007735.2|AC007735  Homo sapiens BAC clone GS1-146D10 fr...   450  e-124
gb|AC006070|AC006070  Homo sapiens chromosome 17, clone hRPK...   450  e-124
gb|AC004746|AC004746  Homo sapiens BAC clone RG290G13 from 7...   450  e-124
gb|AC004518|AC004518  Homo sapiens chromosome 14, BAC CITB-1...   450  e-124
gb|AC002492.1|HUAC002492  Human Chromosome 16 BAC clone CIT9...   450  e-124
gb|AC004957.1|AC004957  Homo sapiens PAC clone RP5-1093O17 f...   448  e-124
gb|U14567|HSU14567  ***ALU WARNING: Human Alu-J subfamily co...   448  e-124
emb|Z83844.5|HS37E16  Human DNA sequence from clone RP1-37E1...   446  e-123
gb|AC004675|AC004675  Homo sapiens chromosome 17, clone hCIT...   446  e-123
emb|AL023284.1|HS406A7  Human DNA sequence from clone 406A7 ...   444  e-123
gb|AF102137.1|AF102137  Homo sapiens PER1 gene, complete cds      442  e-122
gb|U14569|HSU14569  ***ALU WARNING: Human Alu-Sb1 subfamily ...   442  e-122
gb|AC007684.3|AC007684  Homo sapiens BAC clone RP11-449G16 f...   440  e-122
emb|AL049540.11|HSJ890O15  Human DNA sequence from clone 890...   440  e-122
emb|AL023575.1|HS931E15  Human DNA sequence from clone 931E1...   440  e-122
emb|Z99128.1|HS422H11  Homo sapiens DNA sequence from PAC 42...   440  e-122
gb|AC004156|AC004156  Homo sapiens chromosome 19, cosmid R33...   440  e-122
emb|Z83826.12|HS473B4  Human DNA sequence from clone 473B4 o...   438  e-121
gb|U82668|U82668  Homo sapiens shox gene, alternatively spli...   438  e-121
gb|AF190465.1|AF190465  Homo sapiens SH3-containing protein ...   436  e-120
gb|AC006205.7|AC006205  Homo sapiens 12p13.3 PAC RPCI5-1154L...   436  e-120
gb|AC007751.3|AC007751  Homo sapiens, clone 5_A_11, complete...   436  e-120
gb|AC000378|AC000378  Human Chromosome 11 pac pDJ1173a5, com...   434  e-120
gb|S77605|S77605  CaR=calcium-sensing receptor {ALU repeats,...   434  e-120
dbj|AB033054.1|AB033054  Homo sapiens mRNA for KIAA1228 prot...   430  e-119
gb|AF165142.1|AF165142  Homo sapiens chromosome 8 clone BAC ...   428  e-118
emb|AL022302.10|HS633O19  Human DNA sequence from clone RP4-...   428  e-118
emb|Y18000.1|HSAY18000  Homo sapiens NF2 gene                     428  e-118
gb|AC005914|AC005914  Homo sapiens chromosome 5, Bac clone 1...   428  e-118
gb|AC004686|AC004686  Homo sapiens chromosome 17, clone hRPC...   428  e-118
gb|AF010238|AF010238  Homo sapiens von Hippel-Lindau tumor s...   428  e-118
emb|AL034420.16|HS1112F19  Human DNA sequence from clone 111...   426  e-117
gb|AC007690.11|AC007690  Homo sapiens 3q27 BAC RPCI11-42D20 ...   418  e-115
gb|AC003692|AC003692  Human Chromosome 11 pac pDJ306b4, comp...   416  e-114
emb|AL008715.1|HS1216H12  Human DNA sequence from clone CTC-...   410  e-113
gb|AC002036|AC002036  Homo sapiens Chromosome 11q23 PAC clon...   404  e-111
emb|Z97632.1|HS196E23  Human DNA sequence from PAC 196E23 on...   404  e-111
dbj|D84394.1|D84394  Homo sapiens genomic DNA, 237 kb segmen...   404  e-111
gb|AC000115|HSAC000115  Human BAC clone GS188P18, complete s...   404  e-111
emb|AL031718.9|HS371H6  Human DNA sequence from clone LA16-3...   398  e-109
emb|AL050331.11|HSDJ486I3  Human DNA sequence from clone 486...   389  e-106
gb|AC005072.2|AC005072  Homo sapiens BAC clone CTB-181H17 fr...   389  e-106
gb|AC005300.10|AC005300  Homo sapiens, complete sequence          387  e-105
emb|AL035455.29|HS1018E9  Human DNA sequence from clone 1018...   387  e-105
dbj|AP000493.1|AP000493  Homo sapiens genomic DNA, chromosom...   379  e-103
gb|AF111170.3|AF111170  Homo sapiens 14q32 Jagged2 gene, com...   379  e-103
gb|AC005212|AC005212  Homo sapiens chromosome 16, P1 clone 9...   373  e-101
gb|M87909|HUMALNE36  Human carcinoma cell-derived Alu RNA tr...   299  2e-79


 gb|U14573|HSU14573 ***ALU WARNING: Human Alu-Sq subfamily consensus sequence
           Length = 291
           
 Score =  529 bits (267), Expect = e-148
 Identities = 286/291 (98%), Gaps = 1/291 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcgga 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1   ggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggtgga 60

                                                                       
Query: 61  tcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccgtctctact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccgtctctact 120

                                                                       
Query: 121 aaaaatacaaaaattagccgggcgtggtggcgcgcgcctgtaatcccagctactcgggag 180
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 121 aaaaatacaaaaattagccgggcgtggtggcgggcgcctgtaatcccagctactcgggag 180

                                                                       
Query: 181 gctgaggcaggagaatcgcttgaacccgggaggcggaggttgcagtgagccgagatcgcg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gctgaggcaggagaatcgcttgaacccgggaggcggaggttgcagtgagccgagatcgcg 240

                                                              
Query: 241 ccactgcactccagcctgggcgac-agagcgagactccgtctcaaaaaaaa 290
           ||||||||||||||||||||| || ||||||| ||||||||||||||||||
Sbjct: 241 ccactgcactccagcctgggcaacaagagcgaaactccgtctcaaaaaaaa 291





 gb|U14571|HSU14571 ***ALU WARNING: Human Alu-Sc subfamily consensus sequence
           Length = 287
           
 Score =  498 bits (251), Expect = e-139
 Identities = 282/290 (97%), Gaps = 3/290 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcgga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcgga 60

                                                                       
Query: 61  tcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccgtctctact 120
           ||||  ||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 61  tcac--gaggtcaagagatcgagaccatcctggccaacatggtgaaaccccgtctctact 118

                                                                       
Query: 121 aaaaatacaaaaattagccgggcgtggtggcgcgcgcctgtaatcccagctactcgggag 180
           |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 119 aaaaatacaaaaattagctgggcgtggtggcgcgcgcctgtagtcccagctactcgggag 178

                                                                       
Query: 181 gctgaggcaggagaatcgcttgaacccgggaggcggaggttgcagtgagccgagatcgcg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 gctgaggcaggagaatcgcttgaacccgggaggcggaggttgcagtgagccgagatcgcg 238

                                                             
Query: 241 ccactgcactccagcctgggcgacagagcgagactccgtctcaaaaaaaa 290
           ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 239 ccactgcactccagcct-ggcgacagagcgagactccgtctcaaaaaaaa 287





 gb|U14572|HSU14572 ***ALU WARNING: Human Alu-Sp subfamily consensus sequence
           Length = 291
           
 Score =  490 bits (247), Expect = e-136
 Identities = 281/291 (96%), Gaps = 1/291 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcgga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcgga 60

                                                                       
Query: 61  tcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccgtctctact 120
           |||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct: 61  tcacctgaggtcgggagttcgagaccagcctgaccaacatggagaaaccccgtctctact 120

                                                                       
Query: 121 aaaaatacaaaaattagccgggcgtggtggcgcgcgcctgtaatcccagctactcgggag 180
           |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||
Sbjct: 121 aaaaatacaaaaattagccgggcgtggtggcgcatgcctgtaatcccagctactcgggag 180

                                                                       
Query: 181 gctgaggcaggagaatcgcttgaacccgggaggcggaggttgcagtgagccgagatcgcg 240
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 181 gctgaggcaggagaatcgcttgaacccgggaggcggaggttgcggtgagccgagatcgcg 240

                                                              
Query: 241 ccactgcactccagcctgggcgac-agagcgagactccgtctcaaaaaaaa 290
           ||| ||||||||||||||||| || ||||||| ||||||||||||||||||
Sbjct: 241 ccattgcactccagcctgggcaacaagagcgaaactccgtctcaaaaaaaa 291





 gb|U14568|HSU14568 ***ALU WARNING: Human Alu-Sb subfamily consensus sequence
           Length = 288
           
 Score =  482 bits (243), Expect = e-134
 Identities = 279/290 (96%), Gaps = 2/290 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcgga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcgga 60

                                                                       
Query: 61  tcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccgtctctact 120
           ||||  ||||||||||| ||||||||| |||||| |||| ||||||||||||||||||||
Sbjct: 61  tcac--gaggtcaggagatcgagaccatcctggctaacacggtgaaaccccgtctctact 118

                                                                       
Query: 121 aaaaatacaaaaattagccgggcgtggtggcgcgcgcctgtaatcccagctactcgggag 180
           |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct: 119 aaaaatacaaaaattagccgggcgtggtggcgggcgcctgtagtcccagctactcgggag 178

                                                                       
Query: 181 gctgaggcaggagaatcgcttgaacccgggaggcggaggttgcagtgagccgagatcgcg 240
           |||||||||||||||| || |||||||||||||||||| |||||||||||||||||||||
Sbjct: 179 gctgaggcaggagaatggcgtgaacccgggaggcggagcttgcagtgagccgagatcgcg 238

                                                             
Query: 241 ccactgcactccagcctgggcgacagagcgagactccgtctcaaaaaaaa 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 ccactgcactccagcctgggcgacagagcgagactccgtctcaaaaaaaa 288








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